CodonCode Aligner Forum

CodonCode Aligner 11.0.2 was released on November 13, 2023. This update adds support for reading sequence files in .dna format; support for "headless" operation; and fixes several bugs. This is a free update for users of CodonCode Aligner version 11.0.1. Users of older versions of CodonCod...

CodonCode Aligner 11.0.1 was released on July 18, 2021. CodonCode Aligner version 11 introduces several new features and improvements: virtual cloning using Gibson Assembly; synchronization of starts for circular samples; automatic annotation for common features in plasmids; import of GFF files; and...

CodonCode Aligner 10.0.3 was released on May 24, 2023. This update fixes several bugs. This is a free update for users of CodonCode Aligner version 10.0.2. Users of older versions of CodonCode Aligner with expired update and support agreements need to purchase an update to use this version. Installe...

CodonCode Aligner 10.0.2 was released on February 18, 2022. This update fixes several minor bugs, and includes accuracy improvements for separating alleles. This is a free update for users of CodonCode Aligner version 10.0.1. Users of older versions of CodonCode Aligner with expired update and suppo...

CodonCode Aligner 10.0.1 was released on December 17, 2021. CodonCode Aligner version 10 introduces several new features and improvements: virtual restriction cloning; linear and circular sequence maps to display features and restriction sites; a new function to separate alleles in diploid NGS data;...

CodonCode Aligner 9.0.2 was released on May 11, 2021. This update fixes several minor bugs, and includes improvements for assembling long sequences and removing ambiguities. This is a free update for users of CodonCode Aligner version 9.0.1. Users of older versions of CodonCode Aligner with expired ...

CodonCode Aligner 9.0.1.4 for macOS was released on April 14, 2021. This update addresses problems that some Mac users have experienced where mouse clicks were not recognized, specifically when trying to sort in the project view or the feature view. Users on macOS 10.14 or newer who experience this ...

CodonCode Aligner 9.0.1.3 was released on February 2, 2021. This is an update for macOS 11 ("Big Sur") that addresses problems that can occur with certain system settings due to changes in Big Sur. Users of CodonCode Aligner 9.0-9.0.1.2 who use macOS 11, or plan to upgrade to macOS 11 in t...

The COVID-19 pandemic has prompted many universities to switch to online teaching. CodonCode Aligner is widely used in teaching ; this post explains options for using CodonCode Aligner for online classes. Option 1: Trial and demo licenses Everyone who installs and uses CodonCode Aligner for the firs...

CodonCode Corporation just released a new installer that addresses several issues with macOS Catalina (10.15) - specifically, warning messages shown by the Gatekeeper program, and updated versions of some helper programs (Phred and Phrap) that can be used from CodonCode Aligner. The new installer ve...