Search found 101 matches

by Peter Richterich
Thu Jun 06, 2024 3:19 pm
Forum: Support & Questions
Topic: Fixing BLAST problems
Replies: 0
Views: 635

Fixing BLAST problems

In June 2024, users have reported that BLAST searches from CodonCode Aligner fail. This problem is caused by a change in the internet address parameters that the NCBI BLAST server expects. The problem can be fixed by adding a corrected entry for the BLAST server address (URL) in the CodonCode Aligne...
by Peter Richterich
Mon Nov 13, 2023 3:44 pm
Forum: Announcements
Topic: CodonCode Aligner 11.0.2 released
Replies: 0
Views: 65673

CodonCode Aligner 11.0.2 released

CodonCode Aligner 11.0.2 was released on November 13, 2023. This update adds support for reading sequence files in .dna format; support for "headless" operation; and fixes several bugs. This is a free update for users of CodonCode Aligner version 11.0.1. Users of older versions of CodonCod...
by Peter Richterich
Tue Jul 18, 2023 12:11 pm
Forum: Announcements
Topic: CodonCode Aligner 11.0.1 released
Replies: 0
Views: 108707

CodonCode Aligner 11.0.1 released

CodonCode Aligner 11.0.1 was released on July 18, 2021. CodonCode Aligner version 11 introduces several new features and improvements: virtual cloning using Gibson Assembly; synchronization of starts for circular samples; automatic annotation for common features in plasmids; import of GFF files; and...
by Peter Richterich
Wed May 24, 2023 10:54 am
Forum: Announcements
Topic: CodonCode Aligner 10.0.3 released
Replies: 0
Views: 53253

CodonCode Aligner 10.0.3 released

CodonCode Aligner 10.0.3 was released on May 24, 2023. This update fixes several bugs. This is a free update for users of CodonCode Aligner version 10.0.2. Users of older versions of CodonCode Aligner with expired update and support agreements need to purchase an update to use this version. Installe...
by Peter Richterich
Mon Feb 21, 2022 11:45 am
Forum: Announcements
Topic: CodonCode Aligner 10.0.2 released
Replies: 0
Views: 55692

CodonCode Aligner 10.0.2 released

CodonCode Aligner 10.0.2 was released on February 18, 2022. This update fixes several minor bugs, and includes accuracy improvements for separating alleles. This is a free update for users of CodonCode Aligner version 10.0.1. Users of older versions of CodonCode Aligner with expired update and suppo...
by Peter Richterich
Fri Dec 17, 2021 6:31 pm
Forum: Announcements
Topic: CodonCode Aligner 10.0.1 released
Replies: 0
Views: 55720

CodonCode Aligner 10.0.1 released

CodonCode Aligner 10.0.1 was released on December 17, 2021. CodonCode Aligner version 10 introduces several new features and improvements: virtual restriction cloning; linear and circular sequence maps to display features and restriction sites; a new function to separate alleles in diploid NGS data;...
by Peter Richterich
Mon May 17, 2021 4:13 pm
Forum: Announcements
Topic: CodonCode Aligner 9.0.2 released
Replies: 0
Views: 56961

CodonCode Aligner 9.0.2 released

CodonCode Aligner 9.0.2 was released on May 11, 2021. This update fixes several minor bugs, and includes improvements for assembling long sequences and removing ambiguities. This is a free update for users of CodonCode Aligner version 9.0.1. Users of older versions of CodonCode Aligner with expired ...
by Peter Richterich
Wed Apr 14, 2021 1:36 pm
Forum: Announcements
Topic: CodonCode Aligner 9.0.1.4 for macOS released
Replies: 0
Views: 55121

CodonCode Aligner 9.0.1.4 for macOS released

CodonCode Aligner 9.0.1.4 for macOS was released on April 14, 2021. This update addresses problems that some Mac users have experienced where mouse clicks were not recognized, specifically when trying to sort in the project view or the feature view. Users on macOS 10.14 or newer who experience this ...
by Peter Richterich
Tue Feb 02, 2021 1:56 pm
Forum: Announcements
Topic: MacOS 11 (Big Sur) update
Replies: 0
Views: 55548

MacOS 11 (Big Sur) update

CodonCode Aligner 9.0.1.3 was released on February 2, 2021. This is an update for macOS 11 ("Big Sur") that addresses problems that can occur with certain system settings due to changes in Big Sur. Users of CodonCode Aligner 9.0-9.0.1.2 who use macOS 11, or plan to upgrade to macOS 11 in t...
by Peter Richterich
Fri Apr 03, 2020 10:09 am
Forum: Support & Questions
Topic: Online teaching with CodonCode Aligner
Replies: 0
Views: 64405

Online teaching with CodonCode Aligner

The COVID-19 pandemic has prompted many universities to switch to online teaching. CodonCode Aligner is widely used in teaching ; this post explains options for using CodonCode Aligner for online classes. Option 1: Trial and demo licenses Everyone who installs and uses CodonCode Aligner for the firs...